Nutrition is a process of acquiring chemical substances from the environment.  Nutrients are used to make energy for the cells and to provide the necessary building blocks for the replacement and repair of cellular components. 
The nutritional requirements of cells includes at a minimum,   the macronutrients carbon, hydrogen, oxygen and nitrogen. Cells also require trace amounts of micronutrients like Mn, Zn, Fe and Ni. 
Sources of Essential Nutrients

​ The nutrients needed vary greatly among different microbes. All living organisms are made up almost entirely (96 - 98 %) of only 4 common elements;

• carbon,
• oxygen,
• nitrogen and
• hydrogen. 

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The Grocery List

For this reason, the most important elements needed for microbial growth are

1. Carbon
2. Oxygen
3. Nitrogen
4. Hydrogen

​   In order for microbes to be able to use these elements, they must be able to metabolize compounds containing these nutrients. ​

   The nutritional needs of life.

    Nutrients that are needed in relatively large amounts are categorized as macronutrients. Nutrients that are needed in small amount are considered micronutrients or trace elements.  Macronutrients include nitrogen, oxygen, hydrogen, sulfur and phosphorus and are used as building blocks for the cell. Micronutrients are ionic forms the transition metals magnesium, potassium, sodium, calcium and iron. These ions are often used as cofactors or coenzymes within the cell and are needed in only very small quantities.  

Nitrogen
–        required for protein, DNA, RNA, ATP synthesis
  Microorganisms derive N by:
–        Breaking down proteins into amino acids (reuse of amino acids)
–        NH4, – ammonification
–        NO3 – nitrate
–        N2 – nitrogen fixation

Other Elements
•          Sulfur - synthesis of sulfur-containing amino acids
•          Phosphorus - synthesis of DNA, RNA, ATP and phospholipids of cell membrane
•          Trace elements – minerals needed as enzyme cofactors
•          Growth factors – organic chemicals that cannot be synthesized by certain organisms (vitamins, certain amino acids…)
Nutritional Types
               
Photoauthtrophs
Energy source -Light
Carbon source - CO2

Photoheterotrophs
Energy source -Light
Carbon source - Organic

Chemoautotrophs
Chemical
CO2

Chemoorganotrophs
Chemical
Organic

 Heterotrophs
•          Chemoheterotrophs
–        Energy and Carbon source from organic molecules
•          Saprobes derive nutrients from dead organic material
–        Opportunistic pathogene – a saprobe infecting  the compromised host
•          Parasites derive nutrients from living organisms
–        Pathogenes – harm the host (Streptococcus)
–        Obligate intracellular parasites (Rickettsias, Chlamydias, Viruses)
 How microbes eat?
•          Absorb nutrients that are dissolved
•          The molecules need to be small
•          The big molecules are degraded by extracellular enzymes
•          Diffusion of water molecules through a selectively permeable membrane
•          Water molecules will move from the side that has more water to the side with less water
•          Until equilibrium is reached
 Osmotic variations
•          Depending on the concentration of water and solutes on either side of cell membrane, the cell can be subjected to: isotonic, hypotonic, and hypertonic osmotic conditions
•          Isotonic – water concentration is equal inside and outside
•          Hypotonic solutions have lower solute concentrations; cells placed in these solutions will swell and burst
•          In hypertonic solution the cellular water passes out of the cell -  Plasmolysis – shrinking of the cell content inside the plasma membrane
•          Used in food preservation.
•          High concentration of salt or sugar draws the water out of microbial cell.
 The Movement of molecules across the cell membranes
•          Diffusion – movement of molecules from an area of higher concentration to the area of lower concentration
•          Used for transport of small molecules (O2)
 Facilitated diffusion
•          Substance to be transported -combines with the plasma membrane protein – transporter
•          This changes the shape of the transporter – substance is moved across the membrane and released
•          No energy needed
Active transport
•          Brings in molecules against a gradient
•          Involves
–        Membrane proteins – permeases
–        Pumps (transport of H+, K+, Na+)
•          Expenditure of energy (ATP)
•          Group translocation ( a type of active transport)
–        the substance is chemically altered while being transported into the cell
 Eating and drinking by eukaryotic cells
Endocytosis
•          Engulfing particles and molecules from the outside with the cell membrane
Pinocytosis
•          Absorbing liquids (oils)
Phagocytosis
•          White blood cells can ingest whole cells - bacteria
 Environmental Factors that Influence Microbes

• –        Temperature    
• –        pH
• –        Osmotic pressure
• -        Chemical
• –        Elements (C, N,S,P)
• –        Trace elements
• –        Oxygen
• –        Growth factors

 Temperature
•          Microorganisms have minimum, optimum and maximum growth temperatures
Categories of Microbes Based on  Survivable Temperature Ranges

•    •          Psychrophiles                  -100 to 200C         120C
• •          Psychotrophs                       00 to 300C          220C
• •          Mesophiles                          100 to 500C        370C
• •          Thermophiles                     400 to 700C        620C
• •          Hyperthermophiles         650 to 1100C      9400C

 Effect of pH
•          Most bacteria grow in pH range 6.5-7.5
•          Low and high pH inhibits growth of bacteria
•          Mild acids can help preserve foods by preventing further microbial growth (sauerkraut, pickles)
•          Acidophiles tolerant to acidity (bacteria and fungi)
•          Alkalinophiles live in alkaline soils and water up to pH 11.5

Carbon-Based Life Forms

 Carbon is the structural backbone of living matter
–        Autotrophs obtain C from CO2
–        Heterotrophs derive C from organic matter

​ Despite the nutritional needs of organisms being very similar to one another, there is a lot of diversity in the way in which those nutrients are acquired. You have probably heard the term "carbon-based life forms". Carbon is the most abundant element found in all life forms as we now know it. ​Carbon is the central element for life. All organisms require a source of carbon. That carbon may come from an organic source, such as glucose, or an inorganic  source, like sunlight or sulfur. Some organisms are able to obtain the carbon they need from carbon dioxide (CO2) in the air. Organisms that obtain carbon from an inorganic source, must process the carbon in order to get the carbon into a biologically useful form. On the other hand, organisms that that obtain their carbon from an organic source (food) are getting their carbon in a pre-packaged, ready-made form. ​

Hydrogen

   Hydrogen is needed by the cells as a key component of macromolecules. Hydrogen functions in the transfer of energy. Hydrogen is simply 1 electron and 1 proton. Hydrogen can donate its electron becoming a hydrogen ion. The hydrogen ion is simply a proton, which has a +1 charge. In autotrophs hydrogen is required for oxidation-reduction Organisms must obtain energy, or hydrogen, from the environment. ​

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  Oxygen

    Oxygen is of not a requirement for all organisms. In fact, in
its molecular form (O2), it can be toxic to some forms of microorganisms. Organisms that do require oxygen obtain it from the air or from water. 

   Nitrogen

     Many macromolecules contain nitrogen, including proteins, ATP and the nitrogenous bases on DNA and RNA. Some microorganisms are able to undergo nitrogen fixation. which allows them to obtain nitrogen from N2 gas in the atmosphere. Other obtain nitrogen through processing nitrates or even ammonia and urea. Nitrogen fixation is the chemical processes by which atmospheric nitrogen is assimilated into organic compounds

  Sulfur

   Sulfur is used by organisms for protein synthesis, cellular respiration and photosynthesis. Organisms obtain it from the from sufur-containing amino acids methionine and cysteine as well as sulphates and sulphides.

  Phosphorus

    ​Phosphorus is needed in cells for the production nucleic acids and phospholipids, as well as other molecules such as ATP.

 Growth Requirements

     Growth, in terms of microbiology, refers to the number of individual organisms that make up a population of microbes. For example, when bacteria cells are allowed to grow on an agar plate, one single bacterial cell will reproduce via binary fission and give rise to a colony or genetically identical bacteria cells that were all generated from a single parent cell. 
   The photo is of individual colonies of E. Coli cells grown on an agar plate. 

Chemical and Energy Requirements ​

All organisms require 3 things in order to undergo the processes of metabolism:

1. A Source of Carbon
2. A Source of Energy
3. A Source of Electrons (or Hydrogen Atoms)

All cells require three things to conduct metabolism: a carbon source, a source of energy, and a source of electrons or hydrogen atoms. Different organisms are able to use different compounds as their source of carbon. 

There are 4 classes of organisms based on what they use as a source of carbon and what they can metabolize for energy.

1.  Photoautotrophs - 
   1. Carbon Source - Photoautotrophs use carbon dioxide as a carbon source 
   2. Energy Source - Photoautotrophs use light energy from the sun to make their own food.
2. Chcmoautotrophs - 
   1. Carbon Source - Chemoautotrophs use carbon dioxide as a carbon source 
   2. Energy Source - Chemoautotrophs catabolize (break down) organic molecules (lipids, carbohydrates and proteins) for energy.
3. Photoheterotrophs - 
   1. Carbon Source - Photoheterotrophs catabolize organic molecules as a source of carbon.
   2. Energy Source - Photoheterotrophs use light from the sun as an energy source which they use to undergo photosynthesis. 
4. ​Chemoheterotrophs - 
   1. Carbon Source - Chemoheterotrophs use organic compounds as a source of carbon
   2. Energy Source - Chemoheterotrophs use organic compounds as a source of energy, as well. 

ENERGY SOURCE

   The terms "photo-" and "chemo-" refer specifically to the energy source the organism will use. A phototrophic organism will obtain energy from sunlight, whereas a chemotrophic organism will obtain energy from organic molecules (proteins, lipids and carbohydrates). 

ELECTRON SOURCE

Needs for Oxygen

We can also classify organisms based on their need for oxygen. These classes include:

1. Obligate Aerobes ​- ​Obligate Aerobes use oxygen as the final electron acceptor in the electron transport chain.
2. Obligate Anaerobes - Obligate Anaerobes use another inorganic compound (other than oxygen) as the final electron acceptor in the terminate step of the electron transport chain. Some species of obligate anaerobes cannot tolerate oxygen and will die if exposed to oxygen. 
3. Facultative Anaerobes - Facultative anaerobes are able to use one set of metabolic processes when oxygen is present, and another one when oxygen supply is lacking. However, these organisms will undergo aerobic respiration if oxygen is present, because it generates a lot more ATP than anaerobic metabolic pathways.
4. Aerotolerant Anaerobes - Aerotolerant anaerobic prefer to live in the absence of oxygen, but can tolerate being in the presence of oxygen without dying. These organisms are able to tolerate oxygen, because they contain vital enzymes that detoxify dangerous oxygen-containing compounds that would have otherwise had toxic effects in the cell. 
5. Microaerophiles - Microaerophiles are microbes that require low levels of oxygen to thrive.
6. Capnophiles - Capnophiles require low levels of oxygen and high levels of carbon dioxide to grow.Oxygen requirement

• •          Obligate aerobs – require O2 to live
• •          Facultative anaerobs – can grow in absence of O2
• •          Obligate anaerobs – killed by O2 -
• Anaerobes lack superoxide dismutase
• •          Microearophiles – require O2 at concentrations lower than those in air

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Four forms of oxygen are toxic:

• Superoxide free radical – O2- and H2O2 is formed during the normal metabolism
•  Aerobes produce superoxide dismutase to detoxify O2-  by reducing it to water and oxygen

1. Singlet Oxygen (O2) - A singlet oxygen is molecular oxygen that contains high energy electrons. These high energy molecules can be generated during the process of aerobic cellular respiration. These high energy electrons are very reactive and can lead to unwanted chemical reactions within the cell. Phototropic microorganisms have specialized pigments, called carotenoids, that are able to detoxify singlet oxygens by removing the excess energy from the electrons.
2. Superoxide Radicals (02-) - Superoxide radicals can be formed when an oxygen molecule at the end of the electron transport chain undergoes incomplete reduction. Under normal circumstances, the oxygen molecules at the end of the electron transport chain receive 2 electrons from the electron transport chain, and 2 protons from the proton pump. This results in oxygen becoming water (H2O).  Another source of superoxide radicals is when anaerobic organisms undergo their metabolic process in the presence of oxygen. Superoxide radicals can be detoxified by with the enzyme superoxude dismutase. 
3. Peroxide Anion (02 2-) - Peroxide anion can be formed during certain reactions catalyzed by the enzyme, superoxide dismutase. Two other enzymes, catalase and peroxidase, are able to detoxify the peroxide anion.
4. Hydroxyl Radicals (OH) - Hydroxyl radicals are the neutral form of the hydroxide ion. These can be produced from ionizing radiation or when incomplete reduction of hydrogen peroxide occurs. Hydroxyl radicals are extremely reactive. Aerobic cells are protected from hydroxyl radicals, because their metabolic pathways do not use hydrogen peroxide. 

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​ Nitrogen Requirements

   






​     Our Earth's atmosphere contains about 79% nitrogen (N2). Many microorganisms require nitrogen to live. However, very few organisms are able to utilize the nitrogen gas provided so abundantly by the atmosphere. Most microbes acquire nitrogen from organic or inorganic resources. There are small number of bacteria that carry out the vital function of nitrogen fixation. Nitrogen fixation is a process in which these specialized bacteria are able to convert nitrogen gas from the atmosphere into ammonia which is more readily used by organisms.

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Other Chemical Requirements ​

  While carbon, nitrogen, oxygen and hydrogen remain, by far, the most abundant elements in microorganisms, there are also some trace elements that make up a small amount of these tiny lifeforms. Examples of these trace elements include selenium and zinc. 
   Microorganisms also require growth factors. Growth factors are organic compounds that are required for life, but cannot be synthesized within the cell. This is somewhat similar to the "essential amino acids" that humans must consume in their diet to stay healthy. Humans must obtain essential amino acids from the foods they eat, because they are needed by the body, but the body is unable to synthesize these amino acids from other building blocks. 
Some vitamins can be used as growth factors for microbes. ​

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Physical Requirements ​

   Microorganisms also require certain physical conditions in order to live and grow. These physical requirements include temperature, pH, osmolarity and pressure. ​

Temperature Requirements

• Temperature - Different microbes have different temperature tolerances and requirements. Microbes will be able to grow, at least to some extent, when the temperature in within a certain range. However, microbes do have an optimal temperature that allows them to grow (reproduce) more rapidly. This temperature is known at the "optimum growth temperature". Microbes can be categorized according to their needs and tolerances of different temoeratures. 
  • Psychrophiles require temperatures below 20°C. 
  • Mesophiles grow best at temperatures ranging between about 20°C and 40°C. 
  • Thermophiles require temperatures above 45°C. 
  • Hyperthermophiles require temperatures above 80°C. pH 

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• pH - pH is the amount of hydrogen ions (protons or H+) or hydroxyl ions (OH-) that are free in a solution. The reason we refer to the acidity or basicity (alkalinity) of a solution as a "pH value", is because pH is the value of the "potential of hydrogen" The value of pH is calculated as the negative log of the molar concentration of hydrogen ions in solution.   Living organisms are sensitive to pH, because the amount of hydrogen ions or hydroxyl ions will interfere with the normal chemical reactions (especially hydrogen bonding) in the cell. Microbes can be categorized according to their preference and tolerance of pH. 
  • Neutrophiles - Neutrophiles grow best when the pH is close to neutral, 7.0. 
  • Acidophiles - Acidophiles grow best in acidic environments with a pH as low as 0.0.
  • Alkalinophiles - Alkalinophiles grow best in alkaline environments with a pH as high as 11.5.

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Physical Effects of Water

​   Water is necessary to sustain life. Water is known as "the universal solvent", because it is able to dissolve more substances than any other solvent known. Microorganisms need water to dissolve substances in the cell and to participate in metabolic processes. enzymes and nutrients and to act as a reactant in many metabolic reactions. 
   In nature, substances (including water) will diffuse from areas of high concentration to areas of low concentration. Cells are surrounded by a semipermeable plasma membrane that only allows certain solutes to travel across. This selective permeability will create osmotic pressure due to the amount of dissolved substances (solutes) in the extracellular fluid versus the intracellular fluid.

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   Different microorganisms have different preferences and requirements of osmotic pressure. Microbes that do not have a cell wall can experience a phenomenon known as osmotic shock. Osmotic shock occurs when a microbe that lacks a cell wall is placed into an environment that has an osmotic pressure that it cannot tolerate. When the there are more dissolved substances in the surrounding fluid than there are inside of the microorganism, we call this a hypertonic environment. In a hypertonic environment, water molecules will diffuse out of the microoorganism, causing the microbe to undergo crenation (shrinking) which leads to death. When the surrounding environment contains fewer dissolved substances than there are inside the microbe, this is considered as hypotonic environment. In a hypotonic environment, there will be a driving force on water that drives the water molecules to travel into the microbe. This results in swelling or even bursting which leads to death.
    Microorganisms that have a cell wall are more resistant against osmotic pressure, yet they can still experience osmotic stress under certain conditions. We can classify microbe based on their preferences, tolerances and requirements for osmotic pressure.  

These Effects of Osmotic Stress on Cells Lacking a Cell Membrane

The Effect of Osmotic Stress on Cells That Have a Cell Wall

Salt-Lovers (Halophiles)

• Obligate Halophiles - require the high osmotic pressure such as the osmotic pressure provided by salt water. 
• Facultative Halophiles - do not require high osmotic pressure, but they are able to tolerate the high osmotic pressure created by salt water. 

 
   Osmotic pressure is not the only type of pressure that water is able to exert on microorganisms. As anyone who has ever dove into the deep end of a pool knows, the deeper the water is, the more pressure is exerted on the organism. The pressure that exists in the deep ocean creates an environment that few organisms can survive. The organisms that make these depths their home, swell or literally explode as they are brought to the ocean's surface due to the lack of pressure.

• Barophiles - are specially adapted to live in high barometric pressure environments. The physical structure of their membranes, as well as the proteins and enzymes the barophile needs for life, will require high pressure in order to maintain their shape.  


• Effect of Osmotic Pressure
  •          Microorganisms that live in high salt concentration are called Halophyles
  •          Obligate halophyles – require high salt concentrations to survive, ~30% salt
  •          Facultative halophyles - tolerate high salt concentrations (up to 2%)

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Culturing Microorganisms

    Microbiologists collect a small sample of microbes from a given source (we call this small sample an "inoculum") and place them into a medium that contains the nutrients needed for growth. This creates a cell culture. The medium can be in a liquid form (called broth) or in a somewhat solid, gelatin-like form (called agar/agarose). 
    Microbial growth using an agar plate will yield individual colonies of cells that have been derived from a single parent cell. This method is used in clinical laboratories to test samples of feces, saliva, cerebrospinal fluid, or blood for the presence of microorganisms. ​

​Obtaining Pure Cultures

 Culture Media

• Agar - Agar is the most widely used culture media. It has no nutrients, but can be added to nutrient broth to a form nutrient-rich agar, called nutrient agar.
  
  • ​It consists of a complex polysaccharide that has a low melting point and is easy to work with.
    
  • Warm agar can be pour into Petri dishes to form Petri plates, or poured into test tubes that will be kept slanted until the agar solidifies to become slant tubes (or slants). 
• Nutritive Media - is defined as any media that support the growth of a wide range of microorganisms.  
• Differential Media - Differential media is manufactured to undergo visible changes depending on the types of colonies produced. This media assists the microbiologist in identifying more than one microbial species which may be present in a sample. 
• Reducing Media - A reducing medium is used when culturing anaerobes, because it contains compounds that remove free oxygen from the solution. 
• Selective Medium - A selective medium contains ingredients to inhibit the growth of certain microbes in a mixture while allowing the growth of others. 

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USE OF SELECTIVE AND DIFFERENTIAL MEDIA

Differential medium types are those that distinguish microorganisms from one another based on growth characteristics evident when grown on specific medium types. Organisms with differing growth characteristics typically show visible differences in growth when placed on differential media. Examples include blood agar, Eosin Methylene Blue (EMB) agar, Mannitol Salt agar, and MacConkey agar.

Selective medium types are formulated to support the growth of one group of organisms, but inhibit the growth of another.

• May contain inhibitors like... 
  • antimicrobials
  • dyes
  • alcohol 
• Examples include...
  • EMB agar
  • Mannitol Salt agar
  • MacConkey agar
  • Phenylethyl Alcohol (PEA) agar

Eosin Methylene Blue agar (EMB agar) 
- EMB agar is considered a selective media for Gram-positive cells. 
- EMB agar is considered a differential media with respect to lactose fermentation. 

• contains the dyes eosin and methylene blue. 
  
• They inhibit Gram-positive organisms.  
  
• Such a medium is selective for Gram-negative species.   

• Lactose-fermenting organisms such as E. coli produce a black precipitate on EMB.   Their colonies will be either black or possess dark centers with transparent, colorless peripheries.  
  
• Non-lactose fermenters such as Proteus sp., Salmonella sp., or Shigella sp. appear pink or uncolored. 

Mannitol salt agar (7.5% NaCl) is a medium selective for staphylococci and differential with respect to mannitol fermentation. 

• Growth of most bacteria other than staphylococci, which are halophilic, is inhibited by the high concentration of salt in the medium. 
• Fermentation of mannitol is only seen in the pathogenic species of Staphylococcos and is signaled by the production of acidic products leading phenol red in the media to change from a neutral red-orange to bright yellow. 
• Non-pathogenic staphylococci produce small colonies surrounded by red or pink- purple zones due to the production of basic by products due to metabolism.

Blood Agar (5% sheep’s blood- TSA plates) is a nutritive medium with differential properties in respect to hemolysis. 

• Hemolysis is the destruction of erythrocytes (RBCs). The degree to which the erythrocytes are destroyed can be recognized by the effects of hemolytic enzymes on the cells in the medium.
• Complete breakdown of the RBCs is termed beta (β) hemolysis and is recognized by clearing around the colonies creating the hemolysin.
• Partial destruction of the RBCs leads to a greenish brown color on the agar and is termed alpha(α)  hemolysis. 
• Gamma (γ) hemolysis is usually the term applied to growth on blood agar that causes no damage to the RBCs and no change in the medium.

Hemolysis on Blood Agar

Special Culture Techniques

• Low-Oxygen Cultures - Low-oxygen cultures are required for growing microorganisms that thrive in low-oxygen environments. 
• Oxygen-Free Cultures - Carbon dioxide incubators are used to remove oxygen from cultures of anaerobic microbes. 
• Enrichment Cultures - A selective media is used that only allows the growth of specific microbes. 
• Cold-Enrichment Cultures - Microbes that thrive in cold environments must be grown in a culture that is kept cold by refrigeration. 

Preserving Cultures

• Refrigeration (4°C) - This cold temperature will slow the growth of most microbial species without causing death. This is good for short-term storage (3-7 days). 
• Deep-Freezing (-50°C to -95°C) - long-term storage requires colder temperatures of between -50 and -95 degrees Celsius. 
• Lyophilization - This process "freeze dries" the cell culture. The culture is first frozen, then the water content of the culture is removed using vacuum. This is a good technique for log-term storage. 

So, how do we determine the numbers of individual cells in a culture or colony?

• Counting Colonies - Count individual colonies that are formed when plated.
  
• Membrane Filtration - The culture is filtered through a membrane filter then counted using a cell counter slide that contains an etched grid. The total number of cells is estimated from taking the mean average of several counted squares on the grid. 
  
• Electronic Cell Counters - These devices count cells by determining how electrons from an electron beam going through a sample are blocked.  
  
• The Most-Probable Number (MPN) Method - This is a statistical estimating technique based on the fact that the more bacteria in a sample, the more dilutions are required to reduce their number to zero.
  
• Turbidity - Determination of how "cloudy" a sample is using spectrophotometry. 

Barophiles - are specially adapted to live in high barometric pressure environments.

​psychrophiles- 
an organism that grows best at about 15 C and does not grow above 20 C; a cold loving microbe

mesophiles
an organism that grows between about 10 C and 50 C; a moderate-temperature-loving microbe

thermophiles
an organism whose optimum growth temperature is between 50 C and 80 C; a heat loving microbe

hyperthermophiles
an organism whose optimum growth temperature is above 80 C; an extreme heat loving microbe

minimum growth temperature
the lowest temperature at which a species will grow at all

optimum growth temperature
the temperature at which a species grows best

maximum growth temperature
the highest temperature at which a species can grow at all

psychrotrophs
an organism that is capable of growth between about 0 C and 30 C; freezing cold conditions

acidophiles
a bacterium that grows below pH 4

halophiles
organisms that are found in environments with high salt concentrations 

obligate halophile
organisms that require high salt concentrations for growth ...adding the term "obligate" means that the condition must be met in order to sustain life. 

facultative halophiles
An organism capable of growth in, but not requiring, 1-2% salt. The addition of the term "facultative" means the organism can tolerate the condition but does not require the condition. 

nitrogen fixation
The process that some bacteria can perform that converts nitrogen gas from the atmosphere (N2) into ammonia (NH3). Plants then use this nitrogen from the ammonia, that they require to grow.

trace elements
a chemical element required in small amounts for growth

obligate aerobes
An organism that requires molecular oxygen (O2) to live

facultative anaerobes
An organism that can grow with or without molecular oxygen (O2)

obligate anaerobes
an organism that does not use molecular oxygen (O2) and is killed in the presence of O2

Aerotolerant anaerobe
an organism that does not use molecular oxygen (O2) but is not affected by its presence

microaerophiles
an organism that grows best in an environment with less molecular oxygen (O2) than is normally found in air

organic growth factors
an essential organic compound that an organism is unable to synthesize

biofilms
a microbial community that usually forms as a slime layer on a surface

culture medium
the nutrient material prepared for growth of microorganisms in a laboratory

inoculum
microbes introduced into a culture medium to initiate growth

culture
Microorganisms that grow and multiply in a container of culture medium

sterile
free of microorganisms

agar
a complex polysaccharide derived from a marine alga and used as a solidifying agent in culture media

complex media
A culture medium in which the exact chemical composition is not known

nutrient broth
a complex medium made of beef extract and peptone

nutrient agar
nutrient broth containing agar

reducing media
a culture medium containing ingredients that will remove dissolved oxygen from the medium to allow the growth of anaerobes

capnophiles
a microorganism that grows best at relatively high CO2 concentrations

selective media
a culture medium designed to suppress the growth of the unwanted microorganisms and encourage the growth of desired ones

differential medium
a solid culture medium that makes it easier to distinguish colonies of the desired organism

enrichment culture
a culture used for preliminary isolation that favors the growth of a particular microorganism

colony
a visible mass of microbial cells arising from one cell or from a group of the same microbes

deep-freezing
preservation of bacterial culture at 250 C to 295 C

lyophilization (freeze-drying)
freezing a substance and sublimating the ice in a vacuum; also called freeze-drying

binary fission
Prokaryotic cell reproduction by division into two daughter cells

generation time
the time required for a cell or population to double in number

bacterial growth curve
a graph indicating the growth of a bacterial population over time

lag phase
the time interval in a bacterial growth curve during which there is no growth

log phase (exponential growth phase)
the period of bacterial growth or logarithmic increase in cell numbers; also called exponential growth phase

stationary phase
the period in a bacterial growth curve when the number of the cells dividing equals the number dying

death phase (logarithmic decline phase)
the period of logarithmic decrease in a bacterial population; also called logarithmic decline phase

serial dilution
the process of diluting a sample several times

pour plate method
a method of inoculating a solid nutrient medium by mixing bacteria in the melted medium and pouring the medium into a Petri dish to solidify

spread/streak plate method
a plate count method in which inoculum is spread over the surface of a solid culture medium